rs30534166 SNP Detail

Summary

• ID
  rs30534166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114227301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCTTGA TTACTTACAG
  GGCATTCACG CAACTCCTTT TTCTCATGTG TTCTAGTTGA GAGTAACAGT TCATAAGCAC
  AGGAGTAGTA CATAGAGGCC AAAGGGTGCG AAATCAGTAA GATAAGTCAC ATGGGAAAGA
  CTGAATCTGG GGAGAGCAGG GTCTCAGCGG CTAGAGGACA TGCTTCGCGA TAGAGACCAT
  Y
  CGAGCAGACC TGACTTACAG CGAGAGAGAG GTACAGAGCA AAGACGTGGG GGACTTGCCA
  GCCTAAGGCG CAGGCACACC TACAGCGTTA AAATAACAAG ATTGGTCAAG TCTGAGAAGT
  TAGAGGAGAG GAAAGAGAAG AGCCTTAATA TGGAGGGATT TAGGCTTAGA CTGATGTAGA
  GGCCCTTTGT GAGATTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49144168	NES12452312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30534166					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49144168	NES12452312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114227301 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Gm61348	predicted gene, 61348	1330 bp downstream
Rr282443	regulatory region 282443	102 bp distal
Rr282444	regulatory region 282444	500 bp proximal