rs30535394 SNP Detail

Summary

• ID
  rs30535394
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGAAAAAGG TGGAAAATTT AGAAATGTCC ACTGTAGGAC ATGGAATATG GCAAGAAAAC
  TGAACATCAT GGAAAATGAG AAATAACCAC TTGACGACTT GAAAAATGAC GAAATCACTG
  AAAAACGTGA AAAATGAGAA ATGCACACTG TAGGACCTGG AATATGGCGA GAAACCTGAA
  AATAACGGAA AATGAGAAAT ACACACTTTA GGACGTGAAA TAGGGGGGGG GGACTGAAAA
  AGGTGGAAAA TTTAGAAATG TCCACTGTAG GACATGGAAT ATGTCAAGAA AACTGAAAAT
  V
  ATGGAAAATG AGAAACATCC ACTTGACGAC TTGAGAAATG ACGAAATCAC TGAAAAACGT
  GAAAAATGAG AAATGCACAC TGTAGGACCT GGAATATGGC AAGAAACCTG AAAATAACGG
  AAAATGAGAA ATACACACTT TAGGACGTGA AATAGGGGGG GGAAACTGAA AAAGGTGGAA
  AATTTAGAAA TGTCCACTGT AGGATATAGA ATATGGCAAG AAAACTGAAA TTCATGGAAA
  ATGAGAAACA TCCCCTTGAC GACTTGAAAT ATGACGAAAT CACTGAAAAA CGTGAAAAAT
                                                                   
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46417960	mCV24717687	ABI	CRAMUS_MOUSE	f	SNP			G	C
ss46449360	mCV25357947	ABI	CRAMUS_MOUSE	f	SNP				A	C
ss46454308	mCV25398826	ABI	CRAMUS_MOUSE	r	SNP	T		T		G
ss46470953	mCV25368656	ABI	CRAMUS_MOUSE	r	SNP		T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30535394					SNP	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050559 () rs orientation: forward

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1767 bp downstream
Tssr4285	transcription start site region 4285	1742 bp upstream
Tssr4286	transcription start site region 4286	1638 bp downstream
Tssr4287	transcription start site region 4287	1603 bp upstream
Tssr4288	transcription start site region 4288	1575 bp downstream
Tssr4289	transcription start site region 4289	1480 bp upstream
Tssr4290	transcription start site region 4290	1473 bp downstream
Tssr4291	transcription start site region 4291	1393 bp upstream
Tssr4292	transcription start site region 4292	1357 bp downstream
Tssr4293	transcription start site region 4293	1322 bp upstream
Tssr4294	transcription start site region 4294	1320 bp downstream
Tssr4295	transcription start site region 4295	1247 bp upstream
Tssr4296	transcription start site region 4296	1284 bp downstream
Tssr4297	transcription start site region 4297	1220 bp upstream
Tssr4298	transcription start site region 4298	1202 bp downstream
Tssr4299	transcription start site region 4299	1162 bp downstream
Tssr4300	transcription start site region 4300	1124 bp downstream
Tssr4301	transcription start site region 4301	1106 bp upstream
Tssr4302	transcription start site region 4302	1094 bp upstream
Tssr4303	transcription start site region 4303	1039 bp downstream
Tssr4304	transcription start site region 4304	1010 bp upstream
Tssr4305	transcription start site region 4305	941 bp downstream
Tssr4306	transcription start site region 4306	922 bp upstream
Tssr4307	transcription start site region 4307	901 bp downstream
Tssr4308	transcription start site region 4308	869 bp upstream
Tssr4309	transcription start site region 4309	825 bp upstream
Tssr4310	transcription start site region 4310	778 bp downstream
Tssr4311	transcription start site region 4311	750 bp upstream
Tssr4312	transcription start site region 4312	670 bp downstream
Tssr4313	transcription start site region 4313	611 bp upstream
Tssr4314	transcription start site region 4314	599 bp downstream
Tssr4315	transcription start site region 4315	575 bp downstream
Tssr4316	transcription start site region 4316	548 bp upstream
Tssr4317	transcription start site region 4317	472 bp downstream
Tssr4318	transcription start site region 4318	448 bp upstream
Tssr4319	transcription start site region 4319	391 bp upstream
Tssr4320	transcription start site region 4320	327 bp downstream
Tssr4321	transcription start site region 4321	299 bp upstream
Tssr4322	transcription start site region 4322	200 bp downstream
Tssr4323	transcription start site region 4323	165 bp upstream
Tssr4324	transcription start site region 4324	135 bp downstream
Tssr4325	transcription start site region 4325	84 bp downstream
Tssr4326	transcription start site region 4326	46 bp upstream
Tssr4327	transcription start site region 4327	43 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	5 bp downstream
Tssr4330	transcription start site region 4330	140 bp upstream
Tssr4331	transcription start site region 4331	164 bp downstream
Tssr4332	transcription start site region 4332	270 bp downstream
Tssr4333	transcription start site region 4333	282 bp upstream
Tssr4334	transcription start site region 4334	304 bp downstream
Tssr4335	transcription start site region 4335	451 bp downstream
Tssr4336	transcription start site region 4336	455 bp upstream
Tssr4337	transcription start site region 4337	528 bp downstream