rs30536422 SNP Detail

Summary

• ID
  rs30536422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113945039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCAAATG TTCATGCCGA
  TTCCCTAAAG GGAAATTGTT AGAGGCAGTG TTCTTACTCC TTTGAGGGTA ATTTTGCTTT
  AGGATCAACT CCAAAAAATA TAGAATTTTT GGCTCAAAAG TTACCTATAT TTTAAGTTTC
  TTGATATTAA GTAATTTAAT ATTTGTAATG TACTTAGAAT TGTTTCTGAA TGCAACCAGC
  Y
  ACTTTTTGTT ATGATAAAGT ATTGAAGTTG GTGGTAGTGA TGCTAATTAC TATCGATGGA
  AAATTACTGT GTGCCAGATT CTGTGGGAAA TGCTAAATAG CTGTCTGTCC TTTCAACTAC
  CCTGTGAGAG TTGTGACAGC TGTTACTTCT TTCTCTATCT TTCTCTGTCT GTCTGTCTGT
  TGTCTGTCTC TCCTGCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49145518	NES12467488	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30536422					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49145518	NES12467488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113945039 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr274986	regulatory region 274986	639 bp distal
Rr278337	regulatory region 278337	1618 bp distal