rs30537784 SNP Detail

Summary

• ID
  rs30537784
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118624561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTGAGT TTGAAACTTA
  GGGTCGGCAG ATCTGTCAAT TAAAGGTTTA CCTTCATTTA CATTAAGGGC ATTTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCCCCTT
  TTAATCTCTC ACTTCCTTTC TTGCCGATTC CTTCCTTTCT TCTTCCTAAA TCAGAATCAC
  R
  TTGCAAAGAA GAACCAACAG CCCTCCATTC TGTGAAGATT TTAGTCCTGT AAAGACCCTC
  CCACCATGCC AAAACAGCTT GTGCCATATA AAACCAAGAC TTTAATCCCA CTTGTTGCTC
  TCCCCGCCCT TCTCTCTCCA CTCTCCTCCC ACCCCCCACT CCGGAGTCTC TTTACAGCCG
  CATCTCTCCC AGATCAGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46418353	mCV22548737	ABI	CRAMUS_MOUSE	f	SNP	G	A					G	G
ss47326099	NES11373510	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	G	G	A	G	G	A	G
ss138901153	ENSMUSSNP679669	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30537784					SNP	G	A	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47326099	NES11373510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118624561 () rs orientation: forward

Symbol	Name	Function Class
Gm31626	predicted gene, 31626	876 bp upstream
Rr387829	regulatory region 387829	442 bp downstream
Rr474253	regulatory region 474253	733 bp distal
Rr474254	regulatory region 474254	within coordinates
Rr474255	regulatory region 474255	508 bp proximal