rs30537878 SNP Detail

Summary

• ID
  rs30537878
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3035972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTTTTCAGT GATTTCATCT TTTTTTCAAG TCGTCAAGTG GATGTTTCTC ATTTTCCATG
  ATTTTCAGTT TTCTTGCCAT ATTCCATGTC CTACGGTGGA CATTTCTAAA TTTTCCACCT
  TCTTCAGTTT TCACCCCATA TTTCACGTCC TAAAGTGTGT ATTTCTCATT TTCTGTGATT
  TTCAGTTTTC TCACCATATT CCAGGTCCTA CAGTGTGCAT TTCTCATATT TGACGTTTTT
  CAGTGATTTC TTCATGTATC AAGTCGTCAA TTGGATGTTT CTCATTTTCC ATGATTTCAG
  W
  TTTCTTGCCA TATTCCATGT CCTAGAGTGG ATATTTCTAA ATTTTCCACA TTTTTCAGTT
  TTCCTCTCCA TATTTCACGT CCTAAAGTGT GTATTTCTCA TTTTCAGTTA TTTTCAGTTT
  TCTCGCCATA TTACAGGTCC TACAGTGTGC ATATCTCATT TTTTCACGTT TTTCAGTGAT
  TTCGTCATTT TTCAAGTCGT CAAGTGGATG TTTCTCACTT TCCATGATTT TCAGTTTTCT
  TGCCAAATTC CATGTCCTAC AGTGGATATT TCTAAATTTT CCACCTTTTT CACTTTTCCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46418156	mCV25360549	ABI	CRAMUS_MOUSE	f	SNP	T		A
ss46433733	mCV25389607	ABI	CRAMUS_MOUSE	r	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30537878					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3035972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Tssr83597	transcription start site region 83597	1763 bp downstream
Tssr83598	transcription start site region 83598	235 bp downstream
Tssr83599	transcription start site region 83599	69 bp downstream
Tssr83600	transcription start site region 83600	98 bp upstream
Tssr83601	transcription start site region 83601	343 bp upstream
Tssr83602	transcription start site region 83602	384 bp upstream
Tssr83603	transcription start site region 83603	426 bp upstream
Tssr83604	transcription start site region 83604	1358 bp upstream
Tssr88025	transcription start site region 88025	50 bp upstream
Tssr88026	transcription start site region 88026	121 bp downstream
Tssr88027	transcription start site region 88027	375 bp downstream
Tssr88028	transcription start site region 88028	414 bp downstream