rs30540748 SNP Detail

Summary

• ID
  rs30540748
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114117732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGGATT ATTTTAGAGT
  GTATGTGGCA CCGGGTCTTT CGGATTTAAA TAGAATCTCC CCCAGCATTA AAGGTGGATT
  ACTCCCTATT ACTTTTATTG CTTTTCAAGT GTTTTCTTGG AACCCTGTAA TCGTCCTCCT
  AAAAACTGGA TTTCCTGGAG TGTACTTTCT TTTAGGGAAA TTTCAAGAAT GGGTCATAGA
  M
  TTTTTTTAAA GTCTGAAGTT TTAACAGCCG ACGGGACCTG ATTAAAGCAA ATTACTTTGT
  TAAAAACCCG AAACACACAG TGTGTGAGAG AGAGAGAGAG AGAGAGAGAG AGAGGGGGAG
  AGAGAGCTCA TCCTATCTCT ATATCCCTGC TAATAAATCA GACCTGTGTG TGTTTAACAA
  AAACGAGGCC GTGCTTTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss49144695	NES12457989	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A		A	A
ss324533152	CHEV_13_114771404	CHEVERUD	SCREENING_POP	f	SNP							C			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30540748					SNP	A	A	A	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49144695	NES12457989	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114117732 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr486631	regulatory region 486631	150 bp proximal
Tssr121196	transcription start site region 121196	285 bp upstream