rs30540749 SNP Detail

Summary

• ID
  rs30540749
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114117662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAAATT GGCCTTTCAG
  GGCCTGTGAT TGACAGCCTG CTTGTTTCAG CCTTTGAAGG CCCAAGAGGT GGCTGGGATT
  ATTTTAGAGT GTATGTGGCA CCGGGTCTTT CGGATTTAAA TAGAATCTCC CCCAGCATTA
  AAGGTGGATT ACTCCCTATT ACTTTTATTG CTTTTCAAGT GTTTTCTTGG AACCCTGTAA
  K
  CGTCCTCCTA AAAACTGGAT TTCCTGGAGT GTACTTTCTT TTAGGGAAAT TTCAAGAATG
  GGTCATAGAA TTTTTTTAAA GTCTGAAGTT TTAACAGCCG ACGGGACCTG ATTAAAGCAA
  ATTACTTTGT TAAAAACCCG AAACACACAG TGTGTGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGGGGGAG AGAGAGCTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49144696	NES12457988	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30540749					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49144696	NES12457988	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114117662 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr486631	regulatory region 486631	220 bp proximal
Tssr121196	transcription start site region 121196	355 bp upstream