rs30540753 SNP Detail

Summary

• ID
  rs30540753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:114116666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTGTGA ATGTTTATGT
  ATTCATTCCC TTACTGGGGA AGTTTAAGTT GTTTCTGGGT TTTTCAGTTC ATAAACGAAG
  CTGGGACTGA ATAGCTTTGA GTATGTTTAC ATAGGTACAC ATGCCGGCAT TTCCGAAGTA
  AGACTGGACT GTACAATTGA AGCTCCTGGG GACCTAGGGT CCAAGCATGG AGCCTAGTGG
  R
  TACTCACCTT TCGGTGTGGA GATGGTTAAT GGCTCTCTGC GGTTCCCCTT CTTCCTGAGC
  AGGTGCGTGA TGGAGAGCAC ACTTTGAAAC TTTGCTCATC TAGAAAGTGG GATGGATAGC
  CCTAGACCCT GCCTCATAGT GAGGACAAGG CTTAATGAAG GATTTCGAGC GTCGCCTGCC
  CCTTGCTGTC TTCCTCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss49144701	NES12457982	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs30540753					SNP	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49144701	NES12457982	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114116666 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	Intron
Rr486630	regulatory region 486630	1891 bp distal
Rr486631	regulatory region 486631	1216 bp proximal
Tssr121196	transcription start site region 121196	1351 bp upstream