rs30541008 SNP Detail

Summary

• ID
  rs30541008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:117386681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCTTTC TCTTTTATTT
  CTTAGTTTAA AATACAAAAT TTAGTTCACG GGCCAGCTGC CAAGGTTCTC ATAAATCCAC
  TATGTGCCTT AAATTATTTA TTAATTTAGC CCTCTAATCT TCTGGTTTTG AGAACAGTCA
  TCTAGATGAT GAGTTCCTAC ATCCTGATGA CTCAGAGGAC CATAAAAGTC TCATACACCT
  Y
  ATGATGCACA GTGGTACCTG CATTTTGTGC CATTGAGTAG GGGCATTTCA AACCACAGTC
  ATGTGTCTTC CAGCGACAGA GATGCAATTG TGAACTGCAG TGTTGGGTAA TTTCGCCCCC
  TGTGTTCTTT CTAAGCCTGC ATAGTGTAGT CCACCACAGA CCTTGGGTGT GTGTCAGACT
  CTCCTCCTCT GAACCATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49147116	NES12469788	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30541008					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49147116	NES12469788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:117386681 () rs orientation: forward

Symbol	Name	Function Class
Emb	embigin	within coordinates
Rr270627	regulatory region 270627	1081 bp distal
Tssr121224	transcription start site region 121224	699 bp downstream
Tssr121225	transcription start site region 121225	426 bp downstream
Tssr121226	transcription start site region 121226	441 bp upstream