rs30541009 SNP Detail

Summary

• ID
  rs30541009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:117386099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTGATG AATGTGACTT
  GGAAGAAAGA TGATGAGCCC CTTGAGACTA CGGGTGACTT CAATACAACT AAAATGGGCA
  ACACCTTAAC CAGTCAGTAC AGGTTTGTAT AGAAGTGTAC AGACCGCCAG CCACCGCCGG
  TTTAACTACA CGTTTTGCTA TTCACTAAAC ATTTTTTTCC TTCTGCAATC ATTTAAATGT
  Y
  CTGCTAATAT TCTAATTTTC AGAATTTCTA ATTTTACAGA ATTATTTCTG TTTTAAAATT
  TTGATCGATG GCTGTCTTCA TTTTTTATTA AGTATTCTGG GAAATAAGCT TGTATTAATA
  ACTCTAATTA TCTCTAGGTT CATCGTTTTT AATAGCAAAC AATTGGGAAA ATATTCTTGT
  GTCTTTGGAG AAAAGGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49147118	NES12469786	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30541009					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49147118	NES12469786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:117386099 () rs orientation: forward

Symbol	Name	Function Class
Emb	embigin	within coordinates
Rr270627	regulatory region 270627	499 bp distal
Tssr121224	transcription start site region 121224	117 bp downstream
Tssr121225	transcription start site region 121225	135 bp upstream
Tssr121226	transcription start site region 121226	1023 bp upstream