rs30541011 SNP Detail

Summary

• ID
  rs30541011
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:117385950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGCCTA CAAATGTAAT
  GTTCATAACA TAAGTCCTTG TTCTTGTGTG TTGAGCAGAA AAGTCCAATG TATCAGTAGA
  AGAGAACGTA ATTTTGGAAA AGCCTTCTCA TGTGGAACTC AAATGCGTGT ACACAGCAAC
  TAAGGATTTG AACTTGATGA ATGTGACTTG GAAGAAAGAT GATGAGCCCC TTGAGACTAC
  K
  GGTGACTTCA ATACAACTAA AATGGGCAAC ACCTTAACCA GTCAGTACAG GTTTGTATAG
  AAGTGTACAG ACCGCCAGCC ACCGCCGGTT TAACTACACG TTTTGCTATT CACTAAACAT
  TTTTTTCCTT CTGCAATCAT TTAAATGTTC TGCTAATATT CTAATTTTCA GAATTTCTAA
  TTTTACAGAA TTATTTCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49147120	NES12469784	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30541011					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49147120	NES12469784	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:117385950 () rs orientation: forward

Symbol	Name	Function Class
Emb	embigin	within coordinates
Rr270627	regulatory region 270627	350 bp distal
Tssr121224	transcription start site region 121224	20 bp upstream
Tssr121225	transcription start site region 121225	284 bp upstream
Tssr121226	transcription start site region 121226	1172 bp upstream