rs30541013 SNP Detail

Summary

• ID
  rs30541013
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:117385361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT TGAGAATTAG AGGAGACAGA
  K
  ATGACAGCCT TAGGCTTTTG TGCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49147123	NES12469862	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	T	T		T		G	T	T	T		T
ss145405716	ENSMUSSNP3262213	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
ss324543514	CHEV_13_118037632	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30541013					SNP	T	T	G	T	T	T	T	T	T	T	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49147123	NES12469862	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:117385361 () rs orientation: forward

Symbol	Name	Function Class
Emb	embigin	within coordinates
Rr270627	regulatory region 270627	40 bp proximal
Tssr121224	transcription start site region 121224	609 bp upstream
Tssr121225	transcription start site region 121225	873 bp upstream
Tssr121226	transcription start site region 121226	1761 bp upstream