rs30541734 SNP Detail

Summary

• ID
  rs30541734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114116574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCCGTGT CTGAGCGTGT
  ATATGTATAT ATGGACTATG TAGGTCCTAC TTCACTCATT TTCAGTATTT CCATGTATTC
  CAGAACACGA CCTCCTCTGT GAATGTTTAT GTATTCATTC CCTTACTGGG GAAGTTTAAG
  TTGTTTCTGG GTTTTTCAGT TCATAAACGA AGCTGGGACT GAATAGCTTT GAGTATGTTT
  R
  CATAGGTACA CATGCCGGCA TTTCCGAAGT AAGACTGGAC TGTACAATTG AAGCTCCTGG
  GGACCTAGGG TCCAAGCATG GAGCCTAGTG GATACTCACC TTTCGGTGTG GAGATGGTTA
  ATGGCTCTCT GCGGTTCCCC TTCTTCCTGA GCAGGTGCGT GATGGAGAGC ACACTTTGAA
  ACTTTGCTCA TCTAGAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49144702	NES12457980	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30541734					SNP	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49144702	NES12457980	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114116574 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr486630	regulatory region 486630	1799 bp distal
Rr486631	regulatory region 486631	1308 bp proximal
Tssr121196	transcription start site region 121196	1443 bp upstream