rs30541737 SNP Detail

Summary

• ID
  rs30541737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114116099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGGTTAG TTCACTTAGT
  TTTGATCCCT AGTTACCAGG GTTTGGGTTT TAAAGCAGCT TATTGAGTCA CGTGAATGAG
  CTTAGACACA TTGTGCTCTC TAGGTCTGCA GAACAGACTT GGGAATCGTA GGTAGTCGGA
  TCTCAGTTCG GACTCTGCAA ACACGTAGCT AAGTGCAGCA GATAACAGAA GGAGCATCCT
  Y
  ACCCCTCCAA CACGCAGACT AGCAAATGAG AACTTTTACT CTCGGTGCGT TTCAGATCCG
  TTCTGTAGAG AAACGGATCT CTGTTCTCTC CTGTTTTTTT CCCGTCCTCA CTCACTTAAG
  AGCAAGTGCC ATCCTGAAGT TGTTGTCACC TATCTTATCT AGGGCACGCT GTCCTGCTTC
  CCTTCCTAGT CATGTTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
ss49144707	NES12457961	PERLEGEN	MM_PANEL2	f	SNP			C	T	C	T
ss145293387	ENSMUSSNP1489626	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
rs30541737					SNP	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49144707	NES12457961	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114116099 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr486630	regulatory region 486630	1324 bp distal
Rr486631	regulatory region 486631	1783 bp proximal
Tssr121196	transcription start site region 121196	1918 bp upstream