rs30541738 SNP Detail

Summary

• ID
  rs30541738
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114116072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATGAGCTT AGACACATTG TGCTCTCTAG GTCTGCAGAA
  CAGACTTGGG AATCGTAGGT AGTCGGATCT CAGTTCGGAC TCTGCAAACA CGTAGCTAAG
  K
  GCAGCAGATA ACAGAAGGAG CATCCTCACC CCTCCAACAC GCAGACTAGC AAATGAGAAC
  TTTTACTCTC GGTGCGTTTC AGATCCGTTC TGTAGAGAAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49144708	NES12457958	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	G	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30541738					SNP	G	T	T	T	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49144708	NES12457958	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114116072 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr486630	regulatory region 486630	1297 bp distal
Rr486631	regulatory region 486631	1810 bp proximal
Tssr121196	transcription start site region 121196	1945 bp upstream