rs30544398 SNP Detail

Summary

• ID
  rs30544398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70347470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTCTTAT GACTAAGGGA
  CACAAGAAAA AGACTTGAAT GAGCAGATGG AGATATTACC ACCCTAGGTG TAAACTTACG
  TGTCTGTGGA TATAGGATCT TCACACACTT AAAGTATGAT GCATCTCTAA TGATATTAAA
  TATATATTTA TAGGGCTTTA GTGTGGAGGG AGGACACAGC AGATGATTCA TCTTGAATAA
  Y
  AAAACAAAAA TAGCTCTAAA TATTACCTGG AAAGTCATGC AAGAAAAGGG ATTAATTTTA
  CTGGATGTTA AAGTTTTTAC TTATTTGTGA AACAGTAGGA ATATTTAACA CCAATATATG
  ATTTTTCTCA AAGATATTTT TTAAGTCATG CCTGGTGGTG CATGCCTGTA ATTTCAGCAC
  TTACAAGGCT GAGGCAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39196824	mCV24339249	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss139680830	ENSMUSSNP8827	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30544398					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70347470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bin3	bridging integrator 3			Intron
				Noncoding-Transcript-Variant
Rr494843	regulatory region 494843			318 bp distal
Rr494844	regulatory region 494844			950 bp proximal
Rr494845	regulatory region 494845			1044 bp proximal