rs30546434 SNP Detail

Summary

• ID
  rs30546434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136378081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT ACGTTTGCTC AGATTTTAAA
  R
  TTTTGAGTTG TGTTGTGCTG TGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45439495	mCV25269116	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss135936914	ENSMUSSNP3345841	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320974484	CHEV_3_136335284	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30546434					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136378081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr398057	regulatory region 398057	1218 bp downstream
Rr585837	regulatory region 585837	1540 bp distal
Rr585838	regulatory region 585838	within coordinates
Rr585839	regulatory region 585839	1798 bp proximal
Tssr31868	transcription start site region 31868	1894 bp downstream
Tssr31869	transcription start site region 31869	1881 bp downstream
Tssr31870	transcription start site region 31870	1846 bp downstream
Tssr31871	transcription start site region 31871	1793 bp downstream
Tssr31872	transcription start site region 31872	1737 bp downstream
Tssr31873	transcription start site region 31873	1718 bp downstream
Tssr31874	transcription start site region 31874	1592 bp downstream
Tssr31875	transcription start site region 31875	1496 bp downstream
Tssr31876	transcription start site region 31876	1446 bp downstream
Tssr31877	transcription start site region 31877	776 bp upstream