rs30546801 SNP Detail

Summary

• ID
  rs30546801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136390581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTCTCAAG CCCTGCGACA ACGACAGTTG CTATGTATGG
  GTGTGGTGCA AATACAGTGG GGGAACTGTT CGGTGTTTCC TGGCCTGGCG ATGTTGCCAC
  Y
  ATCCATCTGG CCAATCCAAC CTGTCACTCA GTTCAGGCCT TTTAAATGCT TCTACCCTGT
  TGCAGCAACC CTCCAACAAC AGTCTCTGCC TTCAGCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45440393	mCV24276352	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135937022	ENSMUSSNP5048454	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30546801					SNP	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136390581 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr585842	regulatory region 585842			within coordinates
Rr585843	regulatory region 585843			1782 bp proximal
Tssr31878	transcription start site region 31878			66 bp upstream
Tssr35850	transcription start site region 35850			153 bp upstream