rs30547375 SNP Detail

Summary

• ID
  rs30547375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94445019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACCA AAAATAGTAA
  TTAATAAAAT ATCTTTTTAA AAAATTGGAG CCTGGGCTGG AGAGATGGCT CAGTGGTTAA
  GAGCGCTGAC TACTCTTCCA AAGGTCCCGA GTTCAAATCC CAGCAACCAC ATGGTGGCTC
  ACAACCATCC GTAAGGAAAC CTGATGCACT CTTCTGGAGT GTCTGAAGAC AGCTACAGTG
  Y
  ACTCACATAA TAAATAAATA AATCTTAAAA AAAAAAAAAA TTGGAGCCTG AGCTGAGCAT
  GGTAGCGCAG GCCTTTAATC CCAGCACTTG GAAGACAGAG GCAGGCGGAT TTCTGAGTTT
  GAGGCCAGGC TGCTCTACAA AGTGAGTTCC AGGACAGCCA GAGCTATACA GAGAAACCCT
  GTCTCGGGGG GAAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45439506	mCV23091863	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss135505879	ENSMUSSNP3386968	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30547375					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94445019 () rs orientation: forward

Symbol	Name	Function Class
Gm43773	predicted gene 43773	1746 bp upstream
Gm43774	predicted gene 43774	224 bp upstream
Rr375397	regulatory region 375397	258 bp downstream
Snx27	sorting nexin family member 27	Intron