rs30548069 SNP Detail

Summary

• ID
  rs30548069
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32449369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCTTGGGAA ATGCCACCAG ACACACCCAG AGGTGAGTCT CAGCAGTTTC CATAGGTGTT
  TCTTGATCCA GTGAAATTCA TAATCATTGT GAATCATCAC CCCAGCAATG GTAGTAAATC
  CGAAGGCAGG AGAATAATTG TACATGCCTC TAACCCCATA CTTGGAAGGC AGAAGCCAAA
  GGACCACCAT TTCAAATTCA TCCACAGAAG TACAGAATGT TCAAGGCCAG CAGGAGCTAC
  TAAGACATTG CGTCAAAAAA AAAAAAAAAA AACAAACAAA AAACAACAAC AACAAAAAAA
  M
  CCCAACCTAG AAACAAATAA CTATGGTCAT AATTTTAGTG ATTTGGCATG AAACAATAGC
  TTTATTGTGG ACATCTCGGC CTCAAAATGC TTAGGATGGT ATTAACCAGT TGTGATGTTT
  CACACCTGTA ATCTCAGTAC TTGGTCTGAT GAAGCAGGAA GACTGTGCTG AGACAGAGGC
  CAACCCATGG GCTCATGTCT AGATCCTGTC TCAATACATA AGTAAATAAG TTAATTCTAA
  TAAAGGAAGA ATTATGGTGA AATTATTTAA TTCTGATGCA TTTTGGTTTG CTTGCTTCAC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45440302	mCV24283164	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30548069					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32449369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13056	CpG island 13056	1467 bp proximal
Gm56797	predicted gene, 56797	1845 bp upstream
Gm65709	predicted gene, 65709	within coordinates
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	1834 bp upstream
Rr397633	regulatory region 397633	1632 bp upstream
Rr574951	regulatory region 574951	830 bp distal
Rr574952	regulatory region 574952	788 bp proximal
Rr574953	regulatory region 574953	1444 bp proximal
Rr574954	regulatory region 574954	1961 bp proximal
Tssr28746	transcription start site region 28746	1806 bp upstream
Tssr28747	transcription start site region 28747	1887 bp upstream
Tssr28748	transcription start site region 28748	1930 bp upstream