rs30548097 SNP Detail

Summary

• ID
  rs30548097
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44057528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT GGCACTAAAC TGCCCCGACA
  M
  CGGAAAAGTG CCCCGCCAAA GGTTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss44938853	mCV24575363	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss146433145	ENSMUSSNP1035767	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss325817160	CHEV_19_44143579	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30548097					SNP	A	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44057528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	within coordinates
Erlin1	ER lipid raft associated 1	within coordinates
Gm59010	predicted gene, 59010	771 bp upstream
Rr548150	regulatory region 548150	427 bp proximal
Rr548151	regulatory region 548151	782 bp proximal
Rr548152	regulatory region 548152	1388 bp proximal
Tssr159429	transcription start site region 159429	271 bp downstream
Tssr159430	transcription start site region 159430	557 bp downstream
Tssr159431	transcription start site region 159431	601 bp downstream
Tssr159432	transcription start site region 159432	647 bp downstream