rs30548545 SNP Detail

Summary

• ID
  rs30548545
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132795107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTTGAAT AGTGCTACAG CTCAAATGCC AGGCCTCACT
  CATGCTGGGT AAGTACTCTG TCACTGAGTT AGACCTCACC CCCTACTATT CTTTAAAATG
  M
  ACAAATTCTT TACCTAAGGA CACTATTAAA ACGCATAAAC TTTAATGGGA AAAATCCAAC
  TCGCGCTTTT TATTTGAAAA CTTCTTCCAA CAAAATGTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45440108	mCV25027886	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss135916531	ENSMUSSNP6628787	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30548545					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132795107 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13847	CpG island 13847			1834 bp proximal
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Rr398028	regulatory region 398028			1549 bp upstream
Rr585500	regulatory region 585500			1118 bp proximal