rs30548826 SNP Detail

Summary

• ID
  rs30548826
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3035991 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTAGAACGGG AAATATGGCG AGGAAAACTG AAAAAGGTGG AAAATTTAGA AATGTCCACT
  GTAGGACTTG GAATATGGCA AGAAAACTGA AAATCATGGA AAATGAGAAA CATCCACTTG
  ACGACTTGAA AAATGACGAA ATCACTAAAA TACGTGAAAA ATGAGAAATG CACACTGAAG
  GACCTGTAAT ATGGCGAGAG AACTGAAAAT CACGGAAAAT GAGAAATACA CACTTTAGGA
  CGTGAAATAT GGCGAGGAAA ACTGAAAAAG GTGGAAAATT TAGAAATGTC CACTGTAGGA
  H
  GTGGAATATG GCAAGAAAAC TGAAAATCAT GGAAAATGAG AAACATCCAC TTGACGACTT
  GAAAAATGAC GAAATCACTA AAAACCATGA AAAATGAGAA ATGCACACTG AAGGACCTGG
  AATATGGCAA GCAAACTGAA AATCACGGAA AATGAGAAAT ACACTCTTTA GGACGTGAAA
  TATGGCGAGT TAAACTGAAA AAGGTGGAAA ATTTAGAAAT GTCCACTGTA GGACGTGGAA
  TATGGCAAGA AAACTGAAAA TCATGGAAAA TGAGAAACAT CCACTTGACG ACTTGAAAAA
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46419232	mCV24722586	ABI	CRAMUS_MOUSE	f	SNP		T	C
ss46448008	mCV22849631	ABI	CRAMUS_MOUSE	r	SNP	A	G
ss46455480	mCV25360495	ABI	CRAMUS_MOUSE	f	SNP	C		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30548826					SNP	?	?	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3035991 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Tssr83597	transcription start site region 83597	1782 bp downstream
Tssr83598	transcription start site region 83598	254 bp downstream
Tssr83599	transcription start site region 83599	88 bp downstream
Tssr83600	transcription start site region 83600	79 bp upstream
Tssr83601	transcription start site region 83601	324 bp upstream
Tssr83602	transcription start site region 83602	365 bp upstream
Tssr83603	transcription start site region 83603	407 bp upstream
Tssr83604	transcription start site region 83604	1339 bp upstream
Tssr88025	transcription start site region 88025	69 bp upstream
Tssr88026	transcription start site region 88026	102 bp downstream
Tssr88027	transcription start site region 88027	356 bp downstream
Tssr88028	transcription start site region 88028	395 bp downstream