rs30550627 SNP Detail

Summary

• ID
  rs30550627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100825804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGGACAT TTAGACTAGA
  GGTGTCAGGA GCAATCAAGG CGGAAAGGGA TAGTGACTGA TGGGGACAGA TATGACGGTG
  GTGAAAGGGT AAGTCCACCA GAGCCTTTCT ATCTGCTGGA CGGATCACAC AGCATCAGAG
  CCAGCCTTCC TGACCTCCCG ATAGAGCATC CTCCCTTCCT GGCTCTCCTG CCCTCAGTAC
  Y
  GTTCCTGCCT TGGGCATTAG GAGTGGGCTG AAATCTTTAG CTACTGTATG GACCTGGCCA
  CTTCCAGAAG TTCTGCTCTT CTGCCCCTGT GGCTTTTGTA CTTCCCTGTG ACTATTTGAT
  GTCTGGAGTC CCCAGTAGGA GAAGCGATGC GTAATCATGG AGCAAGAAAT GAATCAGCTC
  TGACAAAGGA ATACAGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
ss45440431	mCV25367930	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T
ss46808960	NES10731390	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	T	T	T		T
ss135542941	ENSMUSSNP4225995	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				T
ss320850262	CHEV_3_100722411	CHEVERUD	SCREENING_POP	f	SNP										C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J
rs30550627					SNP	T	T	C	C	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808960	NES10731390	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100825804 () rs orientation: forward

Symbol	Name	Function Class
Rr581925	regulatory region 581925	1271 bp distal
Rr581926	regulatory region 581926	1530 bp distal