rs30550680 SNP Detail

Summary

• ID
  rs30550680
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137668717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCATAAA TAGCTTATGC
  TCAGATGAGT CACATGTAGA TAAAACTTTA GTTACCATCT GTGATCTACC TGACACGCAG
  TGTAAGTACC TGTGTTCTCA CATGTGCAGG TACATGTGTG TATAAGCACA CGTGCACATG
  TATGCACATG GTTGTGGAAG CCAGGGGTTA ACCTCAGGTA TCATTTGTCA GGAATCTTCT
  S
  CATGGATTTT TTTTTTTTTT TGGCAAGGAC TCTCACTGAA CCTGGGGTTC ATCAATTCAG
  CAAGTTCTGT GTGGCCAGTG AGCCCCAGGG ATACCTCCGT GTTCTCCTTT CTAGCATCAG
  GATTATGAGC ACATACCAAC ATTCCTAGTT TTCTACATGG GTTCTGGGAG TTCAACTCAG
  TTATTTTTAT CTTGCATAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45440535	mCV27576211	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss135945653	ENSMUSSNP3498920	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30550680					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137668717 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dapp1	dual adaptor for phosphotyrosine and 3-phosphoinositides 1			Intron
				Noncoding-Transcript-Variant
Rr586037	regulatory region 586037			627 bp distal
Rr586038	regulatory region 586038			525 bp proximal