rs30552013 SNP Detail

Summary

• ID
  rs30552013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47885761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC TTGGAGCTGG TGAGTGCTGA
  R
  TAATACTCAT GAGAAAGGAA AAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39197449	mCV25282778	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss139408785	ENSMUSSNP2825972	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss324597832	CHEV_14_48267979	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30552013					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47885761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	480 bp proximal
Ktn1	kinectin 1	790 bp upstream
Rr297095	regulatory region 297095	39 bp proximal
Tssr125321	transcription start site region 125321	95 bp upstream
Tssr125322	transcription start site region 125322	143 bp upstream
Tssr125323	transcription start site region 125323	798 bp upstream
Tssr125324	transcription start site region 125324	989 bp upstream
Tssr128337	transcription start site region 128337	910 bp downstream