rs30552059 SNP Detail

Summary

• ID
  rs30552059
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145737354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAATAAAA ACTGAGAACT GCCCACCCAT ACCTCAGATC
  ACATGTAAAA GTTAACTCAA AATGAGTCAC AGATCCAAGT ATAACACCCA AAAGTCTCAG
  M
  TGCGTGCTGG TGGCACATCA CACGCCTTTG ATCCCAGCAG GCAAAGGCAG ATAGACCTCT
  GAGTTTGAGA CCTGGTCTAC AAAGTGAGTT CTGGGACAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45440948	mCV24238453	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss136041434	ENSMUSSNP2133267	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss321009358	CHEV_3_145694563	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30552059					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145737354 () rs orientation: forward

Symbol	Name	Function Class
Gm40166	predicted gene, 40166	896 bp upstream
Rr586907	regulatory region 586907	907 bp distal
Rr586908	regulatory region 586908	806 bp distal