rs30552356 SNP Detail

Summary

• ID
  rs30552356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCGGCTT TTCCGGGAGG
  AAGGCATATC TCACTCCCGC GTGCAGCCCG CTATGAGACA GAATAGAGGG CCTTTAGTGA
  TGGAGTATGG AGATGACAGT TGTCGTCATG GAGAATGTTA GTTAGAAAGC TGTGATCATT
  ACAGGCTGGG AAGGGTGCGG TTAGGGCAAC ACCGTGCAGG AGTCAGTAGG AACGAATTCA
  Y
  TGGAGACAAT ACTCGCATTT GAAGGACCTA GAGGGGTTCG TGAACCTCAG CTCGCTCACC
  CACTATCTCA TTTTACTTAA AATAATCACT ACTGAATTGA AAGAACTAGT TCATCATAAG
  GCTCAAGTAA CCGCGGCGCG TTGCCCAAAC ATTTCATTTA CATTCTGGAT GGTCTTCTGA
  GGGTGTCCTT AAGAATGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45441699	mCV24054153	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss320920404	CHEV_3_123211980	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30552356					SNP	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302711 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	104 bp distal
Gm9369	predicted pseudogene 9369	880 bp downstream
Rr584525	regulatory region 584525	188 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	248 bp proximal
Rr584528	regulatory region 584528	1834 bp proximal
Snhg8	small nucleolar RNA host gene 8	726 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	996 bp upstream
Tssr31551	transcription start site region 31551	494 bp downstream
Tssr31552	transcription start site region 31552	447 bp downstream
Tssr35502	transcription start site region 35502	721 bp upstream
Tssr35503	transcription start site region 35503	133 bp upstream