rs30552928 SNP Detail

Summary

• ID
  rs30552928
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17842416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT GATATTTTGT CAAGTAATTC
  S
  AGCCCCCACT CAGCACTTTA CAAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45441422	mCV22676216	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss134653776	ENSMUSSNP5597643	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
ss320673713	CHEV_3_17688252	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30552928					SNP	G	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17842416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	1121 bp distal
Gm10742	predicted gene 10742	1354 bp upstream
Gm56811	predicted gene, 56811	1114 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	1669 bp upstream
Rr573841	regulatory region 573841	1906 bp distal
Rr573842	regulatory region 573842	1125 bp distal
Rr573843	regulatory region 573843	624 bp distal
Rr573844	regulatory region 573844	580 bp proximal
Rr573845	regulatory region 573845	1081 bp proximal
Rr573846	regulatory region 573846	1205 bp proximal
Rr573847	regulatory region 573847	1811 bp proximal
Rr573848	regulatory region 573848	1981 bp proximal
Tssr28480	transcription start site region 28480	1475 bp upstream
Tssr28481	transcription start site region 28481	1640 bp upstream
Tssr28482	transcription start site region 28482	1704 bp upstream
Tssr28483	transcription start site region 28483	1799 bp upstream
Tssr28484	transcription start site region 28484	1868 bp upstream
Tssr32676	transcription start site region 32676	1934 bp upstream
Tssr32677	transcription start site region 32677	1407 bp upstream
Tssr32678	transcription start site region 32678	1355 bp downstream