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rs30553249 SNP Detail
Summary
  • ID
    rs30553249
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:86181481 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ATCACAATTC CTTGTAGGTC TGGTACGAAG CCTCTGGATT
    CTGCTACTCT ATTAATACTG GAATTCCACT AGGACTCCTC TGGGATATCC TGTTGTTGCC
    Y
    TGTGTCATGG AGATCCTGTG GTTTTGGATC TGTAGGACCG GCCCCTTCAT GTACTCTAGC
    AGTTCATTAA TGGGATAGAT GTTGGGTTGG GCCATTCCA                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss45440067 mCV24142033 ABI CRAMUS_MOUSE f SNP C T C
ss135445826 ENSMUSSNP1349346 ENSEMBL ENSEMBL_Sanger f SNP C C C
ss320829510 CHEV_3_86078096 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs30553249 SNP C C T C C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:86181481 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm26343 predicted gene, 26343 1058 bp downstream
Lrba LPS-responsive beige-like anchor within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory