rs30553822 SNP Detail

Summary

• ID
  rs30553822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22036096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACC CCGTCTGCCG AGGCGCCCCC
  R
  GAGCCTTTGC TGCTGCCACC GCCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39197858	mCV22932368	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss139201782	ENSMUSSNP5377440	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss324567167	CHEV_14_22805250	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30553822					SNP	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22036096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6225	CpG island 6225	within coordinates
Cpgi6226	CpG island 6226	1056 bp proximal
Rr488631	regulatory region 488631	1882 bp distal
Rr488632	regulatory region 488632	143 bp proximal
Rr488633	regulatory region 488633	226 bp proximal
Tssr127698	transcription start site region 127698	371 bp upstream
Tssr127699	transcription start site region 127699	1465 bp downstream
Tssr127700	transcription start site region 127700	1528 bp downstream
Tssr127701	transcription start site region 127701	1833 bp downstream
Tssr127702	transcription start site region 127702	1857 bp downstream
Tssr127703	transcription start site region 127703	1966 bp downstream
Zfp503	zinc finger protein 503	within coordinates