rs30553823 SNP Detail

Summary

• ID
  rs30553823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54414442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGC TTAGACAGCT TCCCACCTCT
  M
  CAGGATTACC TGTGATGAAG CAATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39197859	mCV23057136	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss139557241	ENSMUSSNP4441094	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss324635253	CHEV_14_54796660	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30553823					SNP	A	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54414442 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	246 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	936 bp upstream
Traj41	T cell receptor alpha joining 41	660 bp downstream
Traj42	T cell receptor alpha joining 42	1149 bp downstream
Tssr125566	transcription start site region 125566	1003 bp downstream
Tssr125567	transcription start site region 125567	766 bp downstream
Tssr125568	transcription start site region 125568	749 bp downstream
Tssr125569	transcription start site region 125569	729 bp downstream
Tssr125570	transcription start site region 125570	700 bp downstream
Tssr128543	transcription start site region 128543	323 bp upstream