rs30554037 SNP Detail

Summary

• ID
  rs30554037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32452156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC TGCAACTTTT GAATCACTTT
  R
  GACCATATTG GAAGCTAGCC TCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45441354	mCV24283165	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss134749295	ENSMUSSNP7218939	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320698067	CHEV_3_32296929	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30554037					SNP	A	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32452156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13056	CpG island 13056			within coordinates
Gm56797	predicted gene, 56797			812 bp downstream
Gm65709	predicted gene, 65709			1040 bp upstream
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha			Intron
				Noncoding-Transcript-Variant
Rr397633	regulatory region 397633			854 bp downstream
Rr574952	regulatory region 574952			1344 bp distal
Rr574953	regulatory region 574953			932 bp distal
Rr574954	regulatory region 574954			326 bp distal
Rr574955	regulatory region 574955			595 bp distal
Rr574956	regulatory region 574956			within coordinates
Tssr28746	transcription start site region 28746			920 bp downstream
Tssr28747	transcription start site region 28747			863 bp downstream
Tssr28748	transcription start site region 28748			828 bp downstream
Tssr28749	transcription start site region 28749			742 bp downstream
Tssr28750	transcription start site region 28750			711 bp downstream
Tssr28751	transcription start site region 28751			453 bp upstream
Tssr32929	transcription start site region 32929			210 bp downstream