rs30554644 SNP Detail

Summary

• ID
  rs30554644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127077750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTACTCCCC CTGAGGGAGC CCTGAGGTAG AGGAAGTTTC
  AGCCAGAAAA CCAGAAGCCT GTCCCCAGTG TCAGCCTAGT GTTATCAAAG CAAGGATACA
  R
  CCATGGACTG CAGTACCTAG AAACCTTGTA GTTGCTGACC GGGGTGGAGG TGGTGAGACT
  GTGTGCCAGA GTCCTGTAGT GTGCCACAGG ACACATCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45441720	mCV24304497	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss135859302	ENSMUSSNP4545337	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss320952635	CHEV_3_126987019	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30554644					SNP	G	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127077750 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42971	predicted gene 42971	within coordinates
Rr74269	regulatory region 74269	1626 bp proximal
Tssr35567	transcription start site region 35567	1746 bp upstream
Tssr35568	transcription start site region 35568	1717 bp upstream
Tssr35569	transcription start site region 35569	1700 bp upstream
Tssr35570	transcription start site region 35570	1626 bp upstream