rs30554809 SNP Detail

Summary

• ID
  rs30554809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36053548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA CATCTCAAAA CATTTAAACA
  W
  GACGAGTAAA TTGCCTGCCA GGAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45442803	mCV24305385	ABI	CRAMUS_MOUSE	f	SNP		A	T			T	T
ss51452912	NES14433131	PERLEGEN	MM_PANEL2	f	SNP	A			A	A			A	T	T	A
ss134776674	ENSMUSSNP2780789	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30554809					SNP	A	A	T	A	A	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452912	NES14433131	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36053548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	838 bp proximal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	within coordinates
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	514 bp upstream
Rr397641	regulatory region 397641	1155 bp upstream
Rr575296	regulatory region 575296	344 bp proximal
Rr575297	regulatory region 575297	546 bp proximal
Rr575298	regulatory region 575298	1269 bp proximal
Rr575299	regulatory region 575299	1371 bp proximal
Tssr28858	transcription start site region 28858	1018 bp upstream
Tssr33012	transcription start site region 33012	1165 bp downstream
Tssr33013	transcription start site region 33013	1218 bp downstream
Tssr33014	transcription start site region 33014	1251 bp downstream
Tssr33015	transcription start site region 33015	1263 bp downstream