rs30555709 SNP Detail

Summary

• ID
  rs30555709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146470439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAGCACGA TGGCTTCTGA TTGGCAGATT CAGGCTTTTA
  AGTTTTGCTT TAAGTTTTCC CACGTGCTAG GTGTGTGGTG GTGCTGTTGG GGGTCCCTGG
  Y
  ACCAAAACAA AAACTTTTTT TGTTAGTTAA TTATAAAACA AAACAAACAA ACAAACAAAC
  AACAACTACT TTCTCTTCTG ATCCTACTGC CTCGTGTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45441648	mCV25106386	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss321011056	CHEV_3_146427648	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30555709					SNP	C	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146470439 () rs orientation: forward

Symbol	Name	Function Class
Gm40170	predicted gene, 40170	within coordinates
Prkacb	protein kinase, cAMP dependent, catalytic, beta	Intron
Rr587079	regulatory region 587079	1295 bp distal
Rr587080	regulatory region 587080	70 bp proximal
Rr587081	regulatory region 587081	1521 bp proximal