rs30556090 SNP Detail

Summary

• ID
  rs30556090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108639841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTTCTGA TTCTTTCCTA AAAGGTCATA TTTTGCCATA
  CGGAATGCTG CTGTGCGCCA CCTGAAATGA GTCCATGTTA GCCCAGTGAT GAAATGTTTC
  R
  GTGACATTTT GAGAGTGTCT AGGTTATGGG AGACTTCCCC ATCCCCCTTT AAAATGCCAA
  GGCACCTATA ATTTGCATTG TGGGTGTTTT TACAGTTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45940091	mCV24297489	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss133506709	ENSMUSSNP1391523	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30556090					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108639841 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	1946 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	Intron
Cpgi17812	CpG island 17812	1147 bp distal
Rr399817	regulatory region 399817	998 bp downstream
Rr636156	regulatory region 636156	1996 bp distal
Rr636158	regulatory region 636158	1456 bp distal
Rr636159	regulatory region 636159	893 bp distal
Rr636160	regulatory region 636160	700 bp proximal
Tssr58078	transcription start site region 58078	1103 bp downstream
Tssr58079	transcription start site region 58079	884 bp downstream
Tssr58080	transcription start site region 58080	537 bp downstream
Tssr58081	transcription start site region 58081	102 bp downstream
Tssr58082	transcription start site region 58082	239 bp upstream
Tssr58083	transcription start site region 58083	1859 bp upstream