rs30556834 SNP Detail

Summary

• ID
  rs30556834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37514099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAATATA GTGAGTCAGA
  AAGAGGAAGT TAAAAGGCTA AAAAAATTAA AAAAAAAAAA AAAAGGCGAC TACTTCTTCT
  TCATTTGAAT GATCTGTCCT AGCTTTTCTG TCTCCTCTCA TCTGCAGATG ACAGCAGACA
  TTCCCACACA GGCCCCAGCA CTCTTTCAGT TCAAATCACT TCATAAACTC ACCTCTTCAG
  R
  AACCTAGTGG GATAGCCTAG TCCAGAACTT GCCTGGATCA TGACAACAGT CCCTATCCTT
  AATAAAGCCG CCAGTGGGTG CCTTTCAAAT GGCAGGCCTT GACACCTCAG CAAGGTCTGT
  GACTAAGGTG CAATTGTGAG ACATTCAAGC GGAGATGCTA TCGCACAGGT GACCAGGACT
  CATAAGACTG TACAGATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss44939661	mCV23155978	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148941571	ENSMUSSNP2172680	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G		A
ss319691775	CHEV_1_37531863	CHEVERUD	SCREENING_POP	f	SNP				A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30556834					SNP	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37514099 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	74 bp downstream
Rr409535	regulatory region 409535	1315 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	437 bp downstream