rs30557419 SNP Detail

Summary

• ID
  rs30557419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136141401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACAGAATC CTTCATCCTC AGCTGGGCCA
  ATCAGATTTT ATTGAAGTAT TTGGCACAAG GTTGCCCTGT AACGGAGGGC ACCGCCACGG
  TGCAACCACA CGAGATAGCT GTTAGGTAAG ACCAATAAGT TAATTAATGT GAAGGATGCT
  Y
  AGGTGTGGGG AGGCACTAGC ACTCAGAAGT CTCTCAGCTC TGTGGCTCAG GATCTAAGGC
  ACTTAGGGAT CCAGAGAATA CACTGGGTTG GGGGGGGGGC ATCTATGCAC TGGGGAAGGG
  GCTCAGAAGC CATACAATAT GGCAAGTGGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44939772	mCV24740307	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss49680942	NES12978178	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	T		T	C	C	T		T
ss145554154	ENSMUSSNP4590986	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss319995064	CHEV_1_138110240	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30557419					SNP	T	T	C	C	C	C	C	C	T	C	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49680942	NES12978178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136141401 () rs orientation: forward

Symbol	Name	Function Class
Inava	innate immunity activator	mRNA-UTR
Mroh3	maestro heat-like repeat family member 3	835 bp upstream
Rr419387	regulatory region 419387	376 bp distal
Rr419388	regulatory region 419388	634 bp distal
Rr419389	regulatory region 419389	1078 bp proximal
Tssr13921	transcription start site region 13921	835 bp upstream