rs30557684 SNP Detail

Summary

• ID
  rs30557684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8776654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCT ATACTTCAAT CCCAGGGGAT
  Y
  CAGTGCCCTC TGGCCTCCAT GAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44940153	mCV22332481	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146030562	ENSMUSSNP1625590	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30557684					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8776654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10575	CpG island 10575	633 bp distal
Polr2g	polymerase (RNA) II (DNA directed) polypeptide G	733 bp upstream
Rr363766	regulatory region 363766	253 bp distal
Tssr158056	transcription start site region 158056	895 bp upstream
Tssr158057	transcription start site region 158057	872 bp upstream
Tssr158058	transcription start site region 158058	858 bp upstream
Tssr158059	transcription start site region 158059	820 bp upstream
Tssr158060	transcription start site region 158060	725 bp upstream
Tssr158061	transcription start site region 158061	697 bp upstream