rs30557746 SNP Detail

Summary

• ID
  rs30557746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156909188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT TTGCTCCTCT GTGTTTAAAC
  Y
  CCTCCTCCCT TCACTACACC GGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44939965	mCV24701512	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145814250	ENSMUSSNP3627638	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30557746					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156909188 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm30568	predicted gene, 30568	within coordinates
Rr421335	regulatory region 421335	1483 bp distal
Rr421337	regulatory region 421337	16 bp distal
Rr421338	regulatory region 421338	116 bp distal
Rr421339	regulatory region 421339	within coordinates
Rr421340	regulatory region 421340	24 bp proximal
Rr421341	regulatory region 421341	479 bp proximal
Rr421342	regulatory region 421342	565 bp proximal
Rr421343	regulatory region 421343	786 bp proximal
Rr421344	regulatory region 421344	1236 bp proximal