rs30557818 SNP Detail

Summary

• ID
  rs30557818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:53524008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC GAAGCTGTCA CATCCTCTGG
  R
  TTTTCTGACA GTCTTTGGTG TCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44940405	mCV25129950	ABI	CRAMUS_MOUSE	f	SNP	A	G	A			G		A
ss63284340	NES17498547	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A		G	A	A	A	G	G	A	G	G
ss146524769	ENSMUSSNP3762615	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30557818					SNP	A	G	A	A	A	G	G	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63284340	NES17498547	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53524008 () rs orientation: forward

Symbol	Name	Function Class
Dusp5	dual specificity phosphatase 5	Intron
Rr549551	regulatory region 549551	within coordinates
Rr549552	regulatory region 549552	471 bp proximal
Tssr156987	transcription start site region 156987	1756 bp downstream
Tssr156988	transcription start site region 156988	1738 bp downstream
Tssr156989	transcription start site region 156989	1665 bp downstream
Tssr156990	transcription start site region 156990	1635 bp downstream
Tssr156991	transcription start site region 156991	1883 bp upstream
Tssr156992	transcription start site region 156992	1913 bp upstream
Tssr156993	transcription start site region 156993	1938 bp upstream