rs30558198 SNP Detail

Summary

• ID
  rs30558198
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58410444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTTAGCT AGGGTTTTAC TGCTGTAAAC AGACACCACA
  ACCAAGGCAA CTCTTTTTTT TTTTTTTGGA AGATTTTATT CATTTTATAT ATGTGAGTAC
  W
  CTGTCGCTGT CTTCAGACAC ACACCAGAAG AAGGCATCAG ATCCCATTAC AGATGGTTGT
  GAGCCACCAT GTGGTTGCTG GGAATTGAAC TCAGGACAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45443101	mCV25119259	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss135206823	ENSMUSSNP3387213	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320783050	CHEV_3_58306945	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30558198					SNP	A	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58410444 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	within coordinates
Rr375034	regulatory region 375034	1006 bp upstream
Rr577237	regulatory region 577237	796 bp distal
Rr577238	regulatory region 577238	896 bp proximal
Tssr29204	transcription start site region 29204	838 bp downstream