rs30558229 SNP Detail

Summary

• ID
  rs30558229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123603376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTCGCA GAATAACCTT
  CACTCCATGC TGGGCTGGAA GCTTCAAGTT ATTTATGGAC AAGATGTGCT GCCTCTCCTT
  TAAAGTTTGG GGGAGGACAC CCAAAGATTA ACAAGAGAGG ATGGATTTAT CAGGCGGACT
  TTCTGCAAGG AAAGGGAGCT AAACTCATTC TGAAGCTTCT TGTCCCTCAG GTTTGCTCCC
  R
  AAGAACTCGA AGAACTCGGA AGAAGCAACC GACATGATGG TCCCTTGTTT TGCAAAGACT
  CTTGGTTTGC CTATAGTGCA ATCCTAGCCT ACTCCATTAA GACAGGATGA TTTTGACCAC
  TGCCCAGTGG GTGTTAAATG CTTATCACTA CTTTTCATAT TTAGCCCCAG GTATGTTTCC
  TGAAAGCTAT AGAACCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45443201	mCV23882597	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss51028484	NES13904298	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G	A
ss135773764	ENSMUSSNP1985143	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30558229					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51028484	NES13904298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123603376 () rs orientation: forward

Symbol	Name	Function Class
Rr584567	regulatory region 584567	36 bp proximal