rs30558650 SNP Detail

Summary

• ID
  rs30558650
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89340586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT ACTGGACTGG AGCCCCCTGC
  W
  CTAGACCTTG GTCTTTAGCT TCAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45940914	mCV22633801	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss321852062	CHEV_6_89313598	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30558650					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89340586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	219 bp distal
Plxna1	plexin A1	991 bp upstream
Rr146639	regulatory region 146639	within coordinates
Rr152199	regulatory region 152199	721 bp proximal
Tssr57621	transcription start site region 57621	1012 bp upstream
Tssr62008	transcription start site region 62008	1030 bp upstream
Tssr62009	transcription start site region 62009	967 bp upstream
Tssr62010	transcription start site region 62010	11 bp upstream
Tssr62011	transcription start site region 62011	780 bp downstream
Tssr62012	transcription start site region 62012	891 bp downstream