rs30558843 SNP Detail

Summary

• ID
  rs30558843
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124154977 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         AATCAGGTT AACCCGTGGG GCCCCCTAAT TGTCCTTCTG
  ATTCTCGGAG GGGTCAACCC CGTTGCGTTG GGAAACAGCC CCCACCAGGT TTTTAACCTC
  W
  CCTGGGAAGT GACTAATGGA GACCGAGAAA CGGTGTGGGC AATAACCGGC AATCACCCTC
  TGTGGACTTG GTGGCCTGAC CTCACACCAG ATCTCTGTAT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46419394	mCV22574137	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss145830216	ENSMUSSNP6704380	ENSEMBL	ENSEMBL_Sanger	r	SNP	T		T
ss322855354	CHEV_8_125952138	CHEVERUD	SCREENING_POP	r	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30558843					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124154977 () rs orientation: reverse

Symbol	Name	Function Class
Mela	melanoma antigen	within coordinates
Tssr2728	transcription start site region 2728	758 bp upstream
Tssr79965	transcription start site region 79965	172 bp upstream
Tssr83353	transcription start site region 83353	1499 bp upstream
Tssr83354	transcription start site region 83354	672 bp upstream
Tssr83355	transcription start site region 83355	579 bp upstream
Tssr83356	transcription start site region 83356	509 bp upstream
Tssr83357	transcription start site region 83357	390 bp upstream
Tssr83358	transcription start site region 83358	126 bp upstream
Tssr83359	transcription start site region 83359	727 bp downstream
Tssr83360	transcription start site region 83360	834 bp downstream
Tssr83361	transcription start site region 83361	1208 bp downstream
Tssr83362	transcription start site region 83362	1357 bp downstream