rs30558902 SNP Detail

Summary

• ID
  rs30558902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180694004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGG TACCTGAACT TGAGGTTTTC
  R
  TTGGAGGAGA AAACTTTTGT ATGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss44940273	mCV24024104	ABI	CRAMUS_MOUSE	f	SNP		G	A			G
ss46721066	NES10664540	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G		A	G		G	G	A
ss146386929	ENSMUSSNP4652096	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320160126	CHEV_1_182796570	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30558902					SNP	G	G	A	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46721066	NES10664540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180694004 () rs orientation: forward

Symbol	Name	Function Class
Gm71256	predicted gene, 71256	1924 bp upstream
Rr424609	regulatory region 424609	1993 bp distal
Rr424610	regulatory region 424610	1622 bp distal
Sde2	SDE2 telomere maintenance homolog (S. pombe)	within coordinates