rs30559410 SNP Detail

Summary

• ID
  rs30559410
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127688627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTTTTT TTCCATGAGT
  GTGAGGACTT AAGAGTATAC AGGTAAAGTA TGTAGCAAAA TTACAACGAC ACAAGCAACA
  TGCAGAAGCA GGCAGGAAAA TGAAATTTCA TAGTACAATA GAGGAAGCAG GCATGTGATA
  GGGTATCTAT TCTCTAGAAT GTATATTTAA TTTTTTGTTT CATCCCCTTT CCTTGTTCTA
  K
  TAACAATATC AGTAAGACTA GAGTTCCTGG CGCTGTCCAT GTCATTGTAT TGCTAAGGTC
  CAGAGATGGT TAAGGGAAGG ATTTCACATA TGCCATTACA ACCATTTGCA CATTTACTTT
  TGGAAAGGGA GTTTTAGTTG CTGGCTGTGT TTTCCAGTTG AGCAAGAGTA AGAGGAAATC
  AAGACCTTCT CTATTGAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45443312	mCV23455371	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss135874460	ENSMUSSNP360993	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
ss320957986	CHEV_3_127597896	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30559410					SNP	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127688627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	736 bp proximal
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	1295 bp upstream
Rr584895	regulatory region 584895	671 bp distal
Rr584896	regulatory region 584896	1020 bp proximal
Rr584897	regulatory region 584897	1300 bp proximal
Tssr35606	transcription start site region 35606	370 bp upstream
Tssr35607	transcription start site region 35607	530 bp downstream
Tssr35608	transcription start site region 35608	1242 bp downstream
Tssr35609	transcription start site region 35609	1269 bp downstream
Tssr35610	transcription start site region 35610	1293 bp downstream