rs30559448 SNP Detail

Summary

• ID
  rs30559448
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134806733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC CACTTTACCG CGGGCCGTCA
  K
  GGGTGGGGAG AAGGCGAAAC ATTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45940719	mCV24013517	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	G
ss133787592	ENSMUSSNP5027442	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss321982534	CHEV_6_134779788	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30559448					SNP	G	G	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134806733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	159 bp proximal
Crebl2	cAMP responsive element binding protein-like 2	384 bp upstream
Gm67917	predicted gene, 67917	within coordinates
Rr368197	regulatory region 368197	115 bp upstream
Rr639726	regulatory region 639726	1028 bp distal
Rr639727	regulatory region 639727	1244 bp distal
Rr639728	regulatory region 639728	within coordinates
Rr639729	regulatory region 639729	315 bp proximal
Rr639730	regulatory region 639730	496 bp proximal
Rr639731	regulatory region 639731	691 bp proximal
Tssr59250	transcription start site region 59250	375 bp upstream
Tssr59251	transcription start site region 59251	446 bp upstream
Tssr59252	transcription start site region 59252	549 bp upstream
Tssr59253	transcription start site region 59253	994 bp upstream
Tssr59254	transcription start site region 59254	1262 bp upstream