rs30559700 SNP Detail

Summary

• ID
  rs30559700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107008793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGCGGAGT TTTGTTTGGT AAGCTAGGTT TTGTCAAAGA
  ATGGGGTGTT TTCTTTGCGG TGGGGGTCCG GGACACAGGG ATCTAACCCA GTGGCCAGCT
  Y
  GGCGGCGGCG GCGAGCGACA CACCTCGCTA GCTCTGCCCC AGCCGGCCCC TTTAATTCGA
  GTTCGCTGCG GGGCCAGGTG CGGCGCTGCG TGGCGCGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45441979	mCV24965151	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss320863864	CHEV_3_106904395	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30559700					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107008793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13670	CpG island 13670	within coordinates
Kcna2	potassium voltage-gated channel, shaker-related subfamily, member 2	within coordinates
Rr77034	regulatory region 77034	within coordinates
Tssr31156	transcription start site region 31156	488 bp downstream
Tssr31157	transcription start site region 31157	420 bp downstream
Tssr31158	transcription start site region 31158	196 bp downstream
Tssr31159	transcription start site region 31159	74 bp upstream
Tssr31160	transcription start site region 31160	101 bp upstream
Tssr31161	transcription start site region 31161	119 bp upstream
Tssr31162	transcription start site region 31162	183 bp upstream
Tssr31163	transcription start site region 31163	223 bp upstream
Tssr31164	transcription start site region 31164	289 bp upstream
Tssr31165	transcription start site region 31165	1103 bp upstream